outdated mandoc.db contains bogus man on snapshot

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outdated mandoc.db contains bogus man on snapshot

Xavier Sanchez
>Synopsis:    outdated mandoc.db contains bogus man on snapshot
>Category:    mandoc
>Environment:
    System      : OpenBSD 6.5
    Details     : OpenBSD 6.5-current (GENERIC.MP) #184: Wed Aug  7 21:37:16 MDT 2019
             [hidden email]:/usr/src/sys/arch/amd64/compile/GENERIC.MP

    Architecture: OpenBSD.amd64
    Machine     : amd64
>Description:
    Running `man intro` on a fresh install of snapthot gives the following output:

```
primary# man intro
man: /usr/share/man/man9/intro.9: No such file or directory
man: outdated mandoc.db contains bogus man9/intro.9 entry, run makewhatis /usr/share/man
man: /usr/share/man/man3/intro.3: No such file or directory
man: outdated mandoc.db contains bogus man3/intro.3 entry, run makewhatis /usr/share/man
man: /usr/share/man/man6/intro.6: No such file or directory
man: outdated mandoc.db contains bogus man6/intro.6 entry, run makewhatis /usr/share/man
man: /usr/share/man/man2/intro.2: No such file or directory
man: outdated mandoc.db contains bogus man2/intro.2 entry, run makewhatis /usr/share/man
INTRO(1)                    General Commands Manual                   INTRO(1)

NAME
     intro - introduction to general commands (tools and utilities)
[ ... ]
```

>How-To-Repeat:
    I did a FDE setup in a kvm virtual machine, added only / and swap to my disklabel and rebooted.
    Once I was connected, I just ran `man intro`.
>Fix:
    As root, `makewhatis /usr/share/man` did solve the problem

: Run sendbug as root if this is an ACPI report!
: dmesg and usbdevs are attached.
: Feel free to delete or use the -D flag if they contain sensitive information.

dmesg:
OpenBSD 6.5-current (GENERIC.MP) #184: Wed Aug  7 21:37:16 MDT 2019
    [hidden email]:/usr/src/sys/arch/amd64/compile/GENERIC.MP
real mem = 1056804864 (1007MB)
avail mem = 1014673408 (967MB)
mpath0 at root
scsibus0 at mpath0: 256 targets
mainbus0 at root
bios0 at mainbus0: SMBIOS rev. 2.8 @ 0xf57c0 (12 entries)
bios0: vendor SeaBIOS version "1.12.0-1" date 04/01/2014
bios0: QEMU Standard PC (i440FX + PIIX, 1996)
acpi0 at bios0: ACPI 1.0
acpi0: sleep states S5
acpi0: tables DSDT FACP APIC
acpi0: wakeup devices
acpitimer0 at acpi0: 3579545 Hz, 24 bits
acpimadt0 at acpi0 addr 0xfee00000: PC-AT compat
cpu0 at mainbus0: apid 0 (boot processor)
cpu0: Intel Core Processor (Skylake, IBRS), 2808.37 MHz, 06-5e-03
cpu0: FPU,VME,DE,PSE,TSC,MSR,PAE,MCE,CX8,APIC,SEP,MTRR,PGE,MCA,CMOV,PAT,PSE36,CFLUSH,MMX,FXSR,SSE,SSE2,SS,SSE3,PCLMUL,SSSE3,FMA3,CX16,PCID,SSE4.1,SSE4.2,x2APIC,MOVBE,POPCNT,DEADLINE,AES,XSAVE,AVX,F16C,RDRAND,HV,NXE,PAGE1GB,RDTSCP,LONG,LAHF,ABM,3DNOWP,FSGSBASE,TSC_ADJUST,BMI1,AVX2,SMEP,BMI2,ERMS,INVPCID,MPX,RDSEED,ADX,SMAP,CLFLUSHOPT,UMIP,MD_CLEAR,IBRS,IBPB,SSBD,ARAT,XSAVEOPT,XSAVEC,XGETBV1,XSAVES,MELTDOWN
cpu0: 64KB 64b/line 2-way I-cache, 64KB 64b/line 2-way D-cache, 512KB 64b/line 16-way L2 cache
cpu0: ITLB 255 4KB entries direct-mapped, 255 4MB entries direct-mapped
cpu0: DTLB 255 4KB entries direct-mapped, 255 4MB entries direct-mapped
cpu0: smt 0, core 0, package 0
mtrr: Pentium Pro MTRR support, 8 var ranges, 88 fixed ranges
cpu0: apic clock running at 1000MHz
cpu1 at mainbus0: apid 1 (application processor)
TSC skew=-2
cpu1: Intel Core Processor (Skylake, IBRS), 2808.03 MHz, 06-5e-03
cpu1: FPU,VME,DE,PSE,TSC,MSR,PAE,MCE,CX8,APIC,SEP,MTRR,PGE,MCA,CMOV,PAT,PSE36,CFLUSH,MMX,FXSR,SSE,SSE2,SS,SSE3,PCLMUL,SSSE3,FMA3,CX16,PCID,SSE4.1,SSE4.2,x2APIC,MOVBE,POPCNT,DEADLINE,AES,XSAVE,AVX,F16C,RDRAND,HV,NXE,PAGE1GB,RDTSCP,LONG,LAHF,ABM,3DNOWP,FSGSBASE,TSC_ADJUST,BMI1,AVX2,SMEP,BMI2,ERMS,INVPCID,MPX,RDSEED,ADX,SMAP,CLFLUSHOPT,UMIP,MD_CLEAR,IBRS,IBPB,SSBD,ARAT,XSAVEOPT,XSAVEC,XGETBV1,XSAVES,MELTDOWN
cpu1: 64KB 64b/line 2-way I-cache, 64KB 64b/line 2-way D-cache, 512KB 64b/line 16-way L2 cache
cpu1: ITLB 255 4KB entries direct-mapped, 255 4MB entries direct-mapped
cpu1: DTLB 255 4KB entries direct-mapped, 255 4MB entries direct-mapped
cpu1: smt 0, core 0, package 1
cpu2 at mainbus0: apid 2 (application processor)
TSC skew=-9
cpu2: Intel Core Processor (Skylake, IBRS), 2808.03 MHz, 06-5e-03
cpu2: FPU,VME,DE,PSE,TSC,MSR,PAE,MCE,CX8,APIC,SEP,MTRR,PGE,MCA,CMOV,PAT,PSE36,CFLUSH,MMX,FXSR,SSE,SSE2,SS,SSE3,PCLMUL,SSSE3,FMA3,CX16,PCID,SSE4.1,SSE4.2,x2APIC,MOVBE,POPCNT,DEADLINE,AES,XSAVE,AVX,F16C,RDRAND,HV,NXE,PAGE1GB,RDTSCP,LONG,LAHF,ABM,3DNOWP,FSGSBASE,TSC_ADJUST,BMI1,AVX2,SMEP,BMI2,ERMS,INVPCID,MPX,RDSEED,ADX,SMAP,CLFLUSHOPT,UMIP,MD_CLEAR,IBRS,IBPB,SSBD,ARAT,XSAVEOPT,XSAVEC,XGETBV1,XSAVES,MELTDOWN
cpu2: 64KB 64b/line 2-way I-cache, 64KB 64b/line 2-way D-cache, 512KB 64b/line 16-way L2 cache
cpu2: ITLB 255 4KB entries direct-mapped, 255 4MB entries direct-mapped
cpu2: DTLB 255 4KB entries direct-mapped, 255 4MB entries direct-mapped
cpu2: smt 0, core 0, package 2
cpu3 at mainbus0: apid 3 (application processor)
TSC skew=-7
cpu3: Intel Core Processor (Skylake, IBRS), 2808.03 MHz, 06-5e-03
cpu3: FPU,VME,DE,PSE,TSC,MSR,PAE,MCE,CX8,APIC,SEP,MTRR,PGE,MCA,CMOV,PAT,PSE36,CFLUSH,MMX,FXSR,SSE,SSE2,SS,SSE3,PCLMUL,SSSE3,FMA3,CX16,PCID,SSE4.1,SSE4.2,x2APIC,MOVBE,POPCNT,DEADLINE,AES,XSAVE,AVX,F16C,RDRAND,HV,NXE,PAGE1GB,RDTSCP,LONG,LAHF,ABM,3DNOWP,FSGSBASE,TSC_ADJUST,BMI1,AVX2,SMEP,BMI2,ERMS,INVPCID,MPX,RDSEED,ADX,SMAP,CLFLUSHOPT,UMIP,MD_CLEAR,IBRS,IBPB,SSBD,ARAT,XSAVEOPT,XSAVEC,XGETBV1,XSAVES,MELTDOWN
cpu3: 64KB 64b/line 2-way I-cache, 64KB 64b/line 2-way D-cache, 512KB 64b/line 16-way L2 cache
cpu3: ITLB 255 4KB entries direct-mapped, 255 4MB entries direct-mapped
cpu3: DTLB 255 4KB entries direct-mapped, 255 4MB entries direct-mapped
cpu3: smt 0, core 0, package 3
ioapic0 at mainbus0: apid 0 pa 0xfec00000, version 11, 24 pins
acpiprt0 at acpi0: bus 0 (PCI0)
acpicpu0 at acpi0: C1(@1 halt!)
acpicpu1 at acpi0: C1(@1 halt!)
acpicpu2 at acpi0: C1(@1 halt!)
acpicpu3 at acpi0: C1(@1 halt!)
"ACPI0006" at acpi0 not configured
acpipci0 at acpi0 PCI0: _OSC failed
acpicmos0 at acpi0
"PNP0A06" at acpi0 not configured
"PNP0A06" at acpi0 not configured
"PNP0A06" at acpi0 not configured
"QEMU0002" at acpi0 not configured
"ACPI0010" at acpi0 not configured
cpu0: using VERW MDS workaround
pvbus0 at mainbus0: KVM
pvclock0 at pvbus0
pci0 at mainbus0 bus 0
pchb0 at pci0 dev 0 function 0 "Intel 82441FX" rev 0x02
pcib0 at pci0 dev 1 function 0 "Intel 82371SB ISA" rev 0x00
pciide0 at pci0 dev 1 function 1 "Intel 82371SB IDE" rev 0x00: DMA, channel 0 wired to compatibility, channel 1 wired to compatibility
atapiscsi0 at pciide0 channel 0 drive 0
scsibus1 at atapiscsi0: 2 targets
cd0 at scsibus1 targ 0 lun 0: <QEMU, QEMU DVD-ROM, 2.5+> ATAPI 5/cdrom removable
cd0(pciide0:0:0): using PIO mode 4, DMA mode 2
pciide0: channel 1 disabled (no drives)
piixpm0 at pci0 dev 1 function 3 "Intel 82371AB Power" rev 0x03: apic 0 int 9
iic0 at piixpm0
vga1 at pci0 dev 2 function 0 "Red Hat QXL Video" rev 0x04
wsdisplay0 at vga1 mux 1: console (80x25, vt100 emulation)
wsdisplay0: screen 1-5 added (80x25, vt100 emulation)
virtio0 at pci0 dev 3 function 0 "Qumranet Virtio Network" rev 0x00
vio0 at virtio0: address 52:54:00:37:8a:61
virtio0: msix shared
azalia0 at pci0 dev 4 function 0 "Intel 82801FB HD Audio" rev 0x01: apic 0 int 11
azalia0: No codecs found
uhci0 at pci0 dev 5 function 0 "Intel 82801I USB" rev 0x03: apic 0 int 10
uhci1 at pci0 dev 5 function 1 "Intel 82801I USB" rev 0x03: apic 0 int 10
uhci2 at pci0 dev 5 function 2 "Intel 82801I USB" rev 0x03: apic 0 int 11
ehci0 at pci0 dev 5 function 7 "Intel 82801I USB" rev 0x03: apic 0 int 11
usb0 at ehci0: USB revision 2.0
uhub0 at usb0 configuration 1 interface 0 "Intel EHCI root hub" rev 2.00/1.00 addr 1
virtio1 at pci0 dev 6 function 0 "Qumranet Virtio Storage" rev 0x00
vioblk0 at virtio1
scsibus2 at vioblk0: 2 targets
sd0 at scsibus2 targ 0 lun 0: <VirtIO, Block Device, > SCSI3 0/direct fixed
sd0: 20480MB, 512 bytes/sector, 41943040 sectors
virtio1: msix shared
virtio2 at pci0 dev 7 function 0 "Qumranet Virtio Memory Balloon" rev 0x00
viomb0 at virtio2
virtio2: apic 0 int 11
virtio3 at pci0 dev 8 function 0 "Qumranet Virtio Network" rev 0x00
vio1 at virtio3: address 52:54:00:0d:4f:69
virtio3: msix shared
virtio4 at pci0 dev 9 function 0 "Qumranet Virtio Network" rev 0x00
vio2 at virtio4: address 52:54:00:a6:a1:9c
virtio4: msix shared
isa0 at pcib0
isadma0 at isa0
fdc0 at isa0 port 0x3f0/6 irq 6 drq 2
com0 at isa0 port 0x3f8/8 irq 4: ns16550a, 16 byte fifo
pckbc0 at isa0 port 0x60/5 irq 1 irq 12
pckbd0 at pckbc0 (kbd slot)
wskbd0 at pckbd0: console keyboard, using wsdisplay0
pms0 at pckbc0 (aux slot)
wsmouse0 at pms0 mux 0
pcppi0 at isa0 port 0x61
spkr0 at pcppi0
usb1 at uhci0: USB revision 1.0
uhub1 at usb1 configuration 1 interface 0 "Intel UHCI root hub" rev 1.00/1.00 addr 1
usb2 at uhci1: USB revision 1.0
uhub2 at usb2 configuration 1 interface 0 "Intel UHCI root hub" rev 1.00/1.00 addr 1
usb3 at uhci2: USB revision 1.0
uhub3 at usb3 configuration 1 interface 0 "Intel UHCI root hub" rev 1.00/1.00 addr 1
vscsi0 at root
scsibus3 at vscsi0: 256 targets
softraid0 at root
scsibus4 at softraid0: 256 targets
sd1 at scsibus4 targ 1 lun 0: <OPENBSD, SR CRYPTO, 006> SCSI2 0/direct fixed
sd1: 20473MB, 512 bytes/sector, 41929058 sectors
root on sd1a (90a30274343dc118.a) swap on sd1b dump on sd1b
fd0 at fdc0 drive 1: density unknown

usbdevs:
Controller /dev/usb0:
addr 01: 8086:0000 Intel, EHCI root hub
     high speed, self powered, config 1, rev 1.00
     driver: uhub0
Controller /dev/usb1:
addr 01: 8086:0000 Intel, UHCI root hub
     full speed, self powered, config 1, rev 1.00
     driver: uhub1
Controller /dev/usb2:
addr 01: 8086:0000 Intel, UHCI root hub
     full speed, self powered, config 1, rev 1.00
     driver: uhub2
Controller /dev/usb3:
addr 01: 8086:0000 Intel, UHCI root hub
     full speed, self powered, config 1, rev 1.00
     driver: uhub3